Effects of harvesting and an invasive mussel on intertidal rocky shore communities based on historical and spatial comparisons.

Intertidal rocky shores are the most accessible marine habitats and therefore heavily impacted by harvesting. In recent years, they have also been increasingly invaded by alien species, which compounds the effects of harvesting on rocky shore community composition and functioning. Recent survey data, combined with historical data from 1970, were used to assess temporal changes over the intervening period in rocky shore communities at two sites (Wireless Point and Wireless Island). Three kinds of changes emerged: (1) the appearance of alien species; (2) the effects of increased harvesting pressure; and (3) the direct and indirect effects of these changes on other species. A striking result was transformation of mid-shore zones on exposed shores by the appearance of the invasive Mediterranean mussel Mytilus galloprovincialis, and the indirect effects of this on the demography and vertical zonation patterns of the granular limpet Scutellastra granularis. Adult limpets have become excluded by the mussel, whereas juveniles find a secondary home on the shells of the mussel and their abundance has increased. To further disentangle the effects of harvesting from those of alien invasions, a spatial comparison was made between two currently unharvested no-take sites (Scarborough South and Scarborough North) and two regularly harvested sites (Kommetjie and Wireless Point). Harvesting has substantially depleted the granite limpet Cymbula granatina and Argenville's limpet Scutellastra argenvillei. This has led to the proliferation of opportunistic seaweeds, such as Ulva spp. The dual effects of alien invasive species and over-harvesting have major ecosystem effects but do not necessarily diminish biodiversity because the alternative habitats that have developed provide opportunities for colonisation by additional species.

Stormwater outlets: A source of microplastics in coastal zones of Cape Town, South Africa.

The runoff from stormwater outlets are potential sources of microplastics (MPs) in coastal zones. The characteristics and concentrations of MPs in coastal water, sediment and biota (mussels, whelks and sea urchins) were measured in summer (2020/2021) (dry season) and winter (2021) (wet season) from three sites (Camps Bay, Mouille Point and Three Anchor Bay) in Cape Town. MPs were characterised visually using a stereo microscope and chemically using spectroscopy. MP concentrations were higher in water and sediment during winter, and higher in biota in summer. Compared to control sites, MPs were higher at all impact sites sampled. MPs extracted were mainly black polyester (PEST) fibres, 1000 to 2000 µm in length averaging 0.15 MPs/L in water, 52.11 MPs/kg dry weight in sediment and 1.35 MPs/g soft tissue wet weight in biota. The results indicate that coastal stormwater systems are potential sources of MPs in the coastal environment of Cape Town.

Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current.

Microbes occupy diverse ecological niches and only through recent advances in next generation sequencing technologies have the true microbial diversity been revealed. Furthermore, lack of perceivable marine barriers to genetic dispersal (i.e., mountains or islands) has allowed the speculation that organisms that can be easily transported by currents and therefore proliferate everywhere. That said, ocean currents are now commonly being recognized as barriers for microbial dispersal. Here we analyzed samples collected from a total of six stations, four located in the Indian Ocean, and two in the Southern Ocean. Amplicon sequencing was used to characterize both prokaryotic and eukaryotic plankton communities, while shotgun sequencing was used for the combined environmental DNA (eDNA), microbial eDNA (meDNA), and viral fractions. We found that Cyanobacteria dominated the prokaryotic component in the South-West Indian Ocean, while γ-Proteobacteria dominated the South-East Indian Ocean. A combination of γ- and α-Proteobacteria dominated the Southern Ocean. Alveolates dominated almost exclusively the eukaryotic component, with variation in the ratio of Protoalveolata and Dinoflagellata depending on station. However, an increase in haptophyte relative abundance was observed in the Southern Ocean. Similarly, the viral fraction was dominated by members of the order Caudovirales across all stations; however, a higher presence of nucleocytoplasmic large DNA viruses (mainly chloroviruses and mimiviruses) was observed in the Southern Ocean. To our knowledge, this is the first that a statistical difference in the microbiome (from viruses to protists) between the subtropical Indian and Southern Oceans. We also show that not all phylotypes can be found everywhere, and that meDNA is not a suitable resource for monitoring aquatic microbial diversity.

Pentaplacodinium saltonense gen. et sp. nov. (Dinophyceae) and its relationship to the cyst-defined genus Operculodinium and yessotoxin-producing Protoceratium reticulatum.

Strains of a dinoflagellate from the Salton Sea, previously identified as Protoceratium reticulatum and yessotoxin producing, have been reexamined morphologically and genetically and Pentaplacodinium saltonense n. gen. et sp. is erected to accommodate this species. Pentaplacodinium saltonense differs from Protoceratium reticulatum (Claparède et Lachmann 1859) Bütschli 1885 in the number of precingular plates (five vs. six), cingular displacement (two widths vs. one), and distinct cyst morphology. Incubation experiments (excystment and encystment) show that the resting cyst of Pentaplacodinium saltonense is morphologically most similar to the cyst-defined species Operculodinium israelianum (Rossignol, 1962) Wall (1967) and O. psilatum Wall (1967). Collections of comparative material from around the globe (including Protoceratium reticulatum and the genus Ceratocorys) and single cell PCR were used to clarify molecular phylogenies. Variable regions in the LSU (three new sequences), SSU (12 new sequences) and intergenic ITS 1-2 (14 new sequences) were obtained. These show that Pentaplacodinium saltonense and Protoceratium reticulatum form two distinct clades. Pentaplacodinium saltonense forms a monophyletic clade with several unidentified strains from Malaysia. LSU and SSU rDNA sequences of three species of Ceratocorys (C. armata, C. gourreti, C. horrida) from the Mediterranean and several other unidentified strains from Malaysia form a well-supported sister clade. The unique phylogenetic position of an unidentified strain from Hawaii is also documented and requires further examination. In addition, based on the V9 SSU topology (bootstrap values >80%), specimens from Elands Bay (South Africa), originally described as Gonyaulax grindleyi by Reinecke (1967), cluster with Protoceratium reticulatum. The known range of Pentaplacodinium saltonense is tropical to subtropical, and its cyst is recorded as a fossil in upper Cenozoic sediments. Protoceratium reticulatum and Pentaplacodinium saltonense seem to inhabit different niches: motile stages of these dinoflagellates have not been found in the same plankton sample.

A Pelagic Microbiome (Viruses to Protists) from a Small Cup of Seawater.

The aquatic microbiome is composed of a multi-phylotype community of microbes, ranging from the numerically dominant viruses to the phylogenetically diverse unicellular phytoplankton. They influence key biogeochemical processes and form the base of marine food webs, becoming food for secondary consumers. Due to recent advances in next-generation sequencing, this previously overlooked component of our hydrosphere is starting to reveal its true diversity and biological complexity. We report here that 250 mL of seawater is sufficient to provide a comprehensive description of the microbial diversity in an oceanic environment. We found that there was a dominance of the order Caudovirales (59%), with the family Myoviridae being the most prevalent. The families Phycodnaviridae and Mimiviridae made up the remainder of pelagic double-stranded DNA (dsDNA) virome. Consistent with this analysis, the Cyanobacteria dominate (52%) the prokaryotic diversity. While the dinoflagellates and their endosymbionts, the superphylum Alveolata dominates (92%) the microbial eukaryotic diversity. A total of 834 prokaryotic, 346 eukaryotic and 254 unique virus phylotypes were recorded in this relatively small sample of water. We also provide evidence, through a metagenomic-barcoding comparative analysis, that viruses are the likely source of microbial environmental DNA (meDNA). This study opens the door to a more integrated approach to oceanographic sampling and data analysis.

Delivery of marine larvae to shore requires multiple sequential transport mechanisms.

Most sedentary marine animals disperse from their place of origin during their initial life stages as larvae. The delivery of planktonic larvae back to coastal adult habitats after weeks or months of offshore development is commonly thought to be stochastic, resulting in large recruitment fluctuations and making predictive understanding of population dynamics difficult. Time series of invertebrate settlement on intertidal shores have been used to infer how various oceanographic processes deliver planktonic larvae ashore. However, the possibility that successful settlement may involve a series of different transport mechanisms, which are sequentially utilized by late-stage larvae, has received little attention. To address this, we monitored both the delivery of mussel and barnacle larvae to inner-shelf moorings positioned 200-1400 m from the shore, and larval settlement in the intertidal adult habitat, at two contrasting sites: a headland forming an upwelling center and a downstream bay. Model selection was employed to determine the most likely scenario(s) of larval onshore transport from four a priori transport mechanisms individually and in combination: (1) upwelling or relaxation/downwelling, (2) tidal motions, (3) diurnal sea breezes, and (4) surface waves. Mussel larvae were delivered to the inner shelf during upwelling in the bay, but during downwelling at the headland, and were further transported to the shore by surface waves at both locales. In contrast, the delivery of barnacle larvae to the inner shelf occurred during relaxation/downwelling events at both sites, and intertidal settlement coincided with spring tides, suggesting a role for internal tides in their onshore transport. Thus, sequential mechanisms appear to be utilized by larvae to get to the shore, involving interactions of regional-scale upwelling/downwelling processes and local-scale tidal and surface-wave processes, which differ among taxa and among sites with different topography. A bottleneck for larval delivery across the surf zone may be a result of out-of-phase steps in sequential transport mechanisms leaving larvae lost "in transit."